Levels: Primary, Middle, High, Other
| Name | Level |
|---|---|
| Berrien County Juvenile Center | High |
| Blossomland Learning Center | Other |
| Lighthouse Education Center | Other |
| Southside Special Educ School | Other |
| Name | Level |
|---|---|
| Berrien Springs Discovery Academy | High |
| Berrien Springs Virtual Academy | Other |
| Brandywine Innovation Academy | High |
| Buchanan Step Up | Other |
| Buchanan Virtual Academy | Other |
| Career and Alternative Pathways To Education Center | Other |
| Niles Cedar Lane | High |
| Niles Comm Schools Adult Education | High |
| Way Eau Claire | High |
| Way Niles | High |
| Way Watervliet High School | High |
| West Michigan Virtual Battle Creek Hs | High |
| West Michigan Virtual Battle Creek Ms | Middle |
Levels: Primary, Middle, High, Other
Levels: Elementary School, Secondary School, Other - mixed grades
| Name | Level |
|---|---|
| Andrews Academy | Secondary |
| Christ Lutheran School | Elementary |
| Griggs International Academy | Mixed Grades |
| Lake Michigan Catholic Middle and High School | Mixed Grades |
| Niles Adventist School | Elementary |
| River of Life School | Elementary |
| St. Mary School | Elementary |
| St. Pauls Lutheran School | Elementary |
| Trinity Lutheran School | Elementary |
| Trinity Lutheran School | Elementary |
| Village Sda Elementary School | Elementary |
| Name | Level |
|---|---|
| Brookview Montessori School | Elementary |
Levels: Elementary School, Secondary School, Other - mixed grades